Table 2: Candidate target genes with associated binding sites that displayed fold enrichment (FE) values ≥2.
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| Stage | Gene | Sequence | ddCt | FE | Function |
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| co-located | cye-1 | C37A2.4 | 4.78 | 27.47 | Cell Cycle |
| co-located | F20B6.1 | 3.84 | 14.32 | Signaling | |
| co-located | F29A7.6 | 3.58 | 11.96 | Cell Cycle | |
| co-located | hmg-1.2 | F47D12.4 | 3.39 | 10.48 | Chromatin Regulation |
| co-located | hpl-2 | K01G5.2 | 3.28 | 9.71 | Chromatin Regulation |
| co-located | rpa-2 | M04F3.1 | 3.14 | 8.82 | Cell Cycle |
| co-located | ZC123.4 | 2.92 | 7.57 | Cell Cycle | |
| co-located | zer-1 | T24C4.6 | 2.63 | 6.19 | Cell Cycle |
| co-located | tsp-21 | C17G1.8 | 2.48 | 5.58 | Signaling |
| co-located | jmjd-2 | Y48B6A.11 | 2.44 | 5.43 | Chromatin Regulation |
| co-located | riok-1 | M01B12.5 | 2.39 | 5.24 | Signaling |
| co-located | gei-1 | F45H7.2 | 2.2 | 4.59 | Signaling |
| co-located | zfp-1 | F54F2.2 | 2.19 | 4.56 | Chromatin Regulation |
| mid L4 | Y53F4B.3 | 2.09 | 4.26 | Cell Division | |
| late L3/ mid L4 | ntl-3 | Y56A3A.1 | 2.09 | 4.26 | Gene Regulation |
| co-located | paa-1 | F48E8.5 | 2.03 | 4.08 | Signaling |
| co-located | sipa-1 | T27F2.2 | 1.62 | 3.07 | Signaling |
| co-located | swan-1 | F53C11.8 | 1.59 | 3.01 | Signaling |
| co-located | nck-1 | ZK470.5 | 1.53 | 2.89 | Signaling |
| co-located | eat-16 | C16C2.2 | 1.49 | 2.81 | Signaling |
| co-located | sel-7 | K04G11.2 | 1.46 | 2.75 | Signaling |
| late L3/ mid L4 | snr-4 | C52E4.3 | 1.41 | 2.66 | Splicing |
| co-located | bet-2 | F57C7.1 | 1.39 | 2.62 | Chromatin Regulation |
| co-located | dcp-66 | C26C6.5 | 1.36 | 2.57 | Chromatin Regulation |
| co-located | uaf-2 | Y116A8C.35 | 1.3 | 2.46 | Splicing |
| mid L4 | gex-3 | F28D1.10 | 1.26 | 2.39 | Signaling |
| co-located | bet-1 | Y119C1B.8 | 1.23 | 2.34 | Chromatin Regulation |
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